MmuEX6057107 @ mm10
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
disco interacting protein 2 homolog C [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9575362-9601496:+
Coord C1 exon
chr13:9575362-9575481
Coord A exon
chr13:9576804-9576918
Coord C2 exon
chr13:9601357-9601496
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTCTTTCCCTCCAGGGT
3' ss Score
12.58
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CAAAAGTGGCTTGTGTGAAATCAAGAGACATGCACTGGGCACTTGTAGCACACAGAGATCAGAGAGATGTCAACCTGTCCTCGCTGCGCATGTTAATAGTGGCTGATGGAGCAAATCCCT
Seq A exon
GGTCTATTTCTTCTTGTGATGCGTTTCTCAATGTCTTCCAGAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCCTGTGCCAGCTCACCAGAGGCCCTCACTGTGGCAATCCGGAG
Seq C2 exon
GCCCACAGATGACAGCAACCAGCCACCAGGACGAGGTGTGCTATCCATGCATGGGCTGACCTATGGTGTGATACGTGTGGATTCAGAGGAGAAGCTGTCCGTGCTCACAGTGCAGGATGTAGGCCTTGTTATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'20-30,'20-24,31-30=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.181
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
PF0050123=AMP-binding=FE(7.9=100)
C2:
PF0050123=AMP-binding=PD(0.8=4.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTGTGTGAAATCAAGAGACA
R:
CAAGGCCTACATCCTGCACTG
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types