DreEX6095467 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27090469-27097027:+
Coord C1 exon
chr24:27090469-27090588
Coord A exon
chr24:27094732-27094846
Coord C2 exon
chr24:27096888-27097027
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTCTCAGGGT
3' ss Score
13.24
5' ss Seq
GAGGTGACA
5' ss Score
3.85
Exon sequences
Seq C1 exon
GAAAAGTGGCTTGTGTCAAGTCGAGGGATATGCACTGGGCTCTGGTCGCTCATCGAGATCAGAGAGACATCAACCTCAGCTCTCTGCGCATGCTGGTGGTGGCTGATGGATCCAACCCAT
Seq A exon
GGTCCATCTCATCATGTGACGCATTCCTCAATGTCTTCCAGAGTAAAGGTCTGCGGCCGGAGGTCATCTGTCCGTGTGCCAGTTCAGCTGAAGCCCTAACTGTGGCCATCAGGAG
Seq C2 exon
GCCCACAGATGACAGTAATCAGCCGCCGGGTCGAGGTGTGCTGTCTATGCAGGGTCTGAGCTATGGTGTCATCCGAGTGGACTCAGAGGAGCGTCTGTCTGTGCTCACCGTACAGGATGTGGGCACTGTGATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'19-23,'19-21,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.229
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
PF0050123=AMP-binding=FE(8.0=100)
C2:
PF0050123=AMP-binding=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGTCAAGTCGAGGGAT
R:
CACAGTGCCCACATCCTGTAC
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]