GgaEX6018474 @ galGal4
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
disco-interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr2:9965937-9971428:-
Coord C1 exon
chr2:9971309-9971428
Coord A exon
chr2:9970409-9970523
Coord C2 exon
chr2:9965937-9966076
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCCTTCCCTCAGGGT
3' ss Score
12.99
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
CAAAAGTTGCCTGTGTAAAATCCAGAGACATGCACTGGGCATTGGTGGCACATCGAGATCAGAGAGACATCAACCTCTCCTCACTGCGAATGCTCATAGTGGCTGATGGTGCCAACCCAT
Seq A exon
GGTCTATTTCTTCCTGTGATGCATTTCTCAATGTCTTCCAAAGCAAAGGTCTGAGACAGGAGGTCATTTGTCCCTGCGCTAGTTCACCAGAAGCTCTCACTGTGGCTATCCGAAG
Seq C2 exon
GCCAACAGATGACAGCAATCAACCACCAGGCAGAGGAGTTCTGTCCATGCATGGTCTCACATATGGAGTGATTCGGGTGGACTCTGAAGAAAAGCTGTCTGTTCTGACTGTCCAGGATGTTGGCTTAGTGATGCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'16-19,'16-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.229
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.7=100)
A:
PF0050123=AMP-binding=PD(0.3=14.3)
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTGTAAAATCCAGAGACA
R:
CCTGGCATCACTAAGCCAACA
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]