HsaEX6087271 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:415434-430086:-
Coord C1 exon
chr10:429967-430086
Coord A exon
chr10:428587-428701
Coord C2 exon
chr10:415434-415573
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTCTTTCACTCTAGGGT
3' ss Score
11.57
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CAAAAGTGGCGTGTGTGAAATCGAGGGATATGCATTGGGCATTAGTAGCACACAGAGATCAGAGAGACATCAACCTCTCCTCTCTGCGAATGCTGATAGTGGCGGACGGCGCGAACCCCT
Seq A exon
GGTCTATTTCTTCTTGCGATGCATTTCTCAATGTCTTCCAAAGTAAAGGCCTTCGACAGGAGGTCATCTGTCCTTGTGCCAGCTCGCCAGAGGCCCTCACTGTGGCCATCCGGAG
Seq C2 exon
GCCCACGGATGACAGTAACCAGCCCCCGGGCCGGGGTGTCCTCTCCATGCATGGACTGACCTATGGGGTCATTCGTGTGGACTCGGAAGAGAAGCTGTCCGTGCTCACCGTGCAGGATGTCGGCCTCGTGATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.240
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(17.0=100)
A:
PF0050123=AMP-binding=FE(16.6=100)
C2:
PF0050123=AMP-binding=FE(20.1=100),PF0022721=Proteasome=PU(28.4=44.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTGTGAAATCGAGGGAT
R:
ATCACGAGGCCGACATCCTG
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)