BtaEX6064945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47080954-47087529:+
Coord C1 exon
chr13:47080954-47081088
Coord A exon
chr13:47085798-47085917
Coord C2 exon
chr13:47087332-47087529
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCATGATTCTGTTTTCAGGTG
3' ss Score
9.94
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AAAATCACTCTGCACCTCCTGACGTAACCACTTACACCTCAGAACATGCAATACAAGTAGAAAGGCCGCAAGGCTCCACGACGTCGCGGACAGCCCCGAAGTATGGCAATGCCGAGCTCATGGAGACTGGCGATG
Seq A exon
GTGTGCCTGTAAGTAGCCGCGTATCTGCAAAGATCCAGCAGCTTGTCAATACCCTCAAACGACCCAAACGACCACCCTTACGGGAATTCTTCGTCGATGACTTTGAAGAACTACTAGAAG
Seq C2 exon
TTCAACAACCAGATCCAAACCAGCCAAAGCCAGAGGGAGCCCAGATGTTGGCGATGCGTGGGGAGCAGCTGGGTGTGGTTACAAATTGGCCCCCATCTTTAGAAGCAGCGTTACAGCGATGGGGGACCATCTCACCAAAGGCCCCGTGCTTGACCACGATGGACACGAACGGAAAACCTCTCTACATCCTTACTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.561 C2=0.313
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=PU(6.1=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCACCTCCTGACGTAA
R:
CATCGCTGTAACGCTGCTTCT
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]