HsaEX6087262 @ hg38
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr10:408926-419199:-
Coord C1 exon
chr10:419065-419199
Coord A exon
chr10:415769-415888
Coord C2 exon
chr10:408926-409017
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGCTGATTCCTGTTTTTCAGGAG
3' ss Score
8.56
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAAATCATTCTGCACCTCCTGACGTAACCACGTACACCTCAGAGCACTCGATACAGGTGGAGAGACCGCAGGGTTCCACGGGGTCCCGGACAGCGCCCAAGTACGGCAACGCCGAGCTCATGGAGACCGGGGATG
Seq A exon
GAGTACCAGTAAGTAGCCGGGTGTCAGCAAAAATCCAGCAGCTTGTCAATACCCTCAAACGACCGAAACGACCACCTTTACGAGAATTCTTTGTCGATGACTTTGAAGAATTATTAGAAG
Seq C2 exon
GCAAGCTGTGGACAAGAAGTATGAAGGTCGCTTACAGCATTCTACACAAATTAGGCACAAAGCAGGAACCCATGGTCCGGCCTGGAGATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240_MULTIEX2-13/14=12-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.561 C2=0.097
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCATTCTGCACCTCCTGACG
R:
CCTATCTCCAGGCCGGACC
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains