RnoEX6053855 @ rn6
Exon Skipping
Gene
ENSRNOG00000015288 | Dip2c
Description
disco-interacting protein 2 homolog C [Source:RGD Symbol;Acc:1560155]
Coordinates
chr17:63691207-63694603:+
Coord C1 exon
chr17:63691207-63691341
Coord A exon
chr17:63692923-63693042
Coord C2 exon
chr17:63694406-63694603
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGGTGGTTCCTATTTTTCAGGTG
3' ss Score
10.25
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAAATCATTCTGCACCTCCTGATGTAACCACATACACCTCAGAACACTCAATACAAGTGGAAAGGCCACAGGGCTCTACCACATCCCGGACAGCACCAAAGTATGGCAATGCTGAGCTCATGGAGACTGGGGATG
Seq A exon
GTGTACCAGTAAGTAGCCGGGTATCAGCAAAAATTCAGCAGCTTGTCAATACCCTTAAACGACCGAAGAGACCACCATTACGGGAATTCTTTGTTGATGACTTTGAGGAATTGTTAGAAG
Seq C2 exon
TTCAACAACCAGATCCAAACCAACCAAAGCCAGAGGGCGCCCAGATGCTGGCCACAAGAGGGGAGCAGTTGGGAGTCGTCACAAACTGGCCACCCTCTTTAGAAGCTGCACTACAACGATGGGGGACCATCTCTCCGAAGGCTCCCTGCCTGACTACCATGGACACAAATGGCAAACCCCTGTACATCCTCACTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015288-'13-14,'13-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.585 C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=PU(6.1=43.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGACAGCACCAAAGTATG
R:
GAGGATGTACAGGGGTTTGCC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]