GgaEX0009500 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9957002-9959736:-
Coord C1 exon
chr2:9959605-9959736
Coord A exon
chr2:9958122-9958241
Coord C2 exon
chr2:9957002-9957199
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATTGATCCCTGTCCTGCAGGAG
3' ss Score
8.15
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AAAATCATTCTGCCCCTCCAGATGTTACCACTTACACTTCAGAACACTCAATACAAGTAGAAAGGCCACAAGGATCAACGGCACGAGTGGCACCAAAGTATGGAAATGCTGAACTTATGGAAACCGGTGATG
Seq A exon
GAGTACCAGTGAGCAGCAGAGTGTCAGCAAAGATTCAGCAGCTGGTCAATACACTAAAACGGCCCAAACGACCACCATTACGAGAGTTCTTTGTAGATGACTTTGAGGAATTGTTAGAAG
Seq C2 exon
TTCAACAGCCAGATCCAAACCAGCCAAAGCCAGAAGGAGCTCAGATGTTGGCTATGCGTGGGGAACAATTAGGTGTGGTTACAAATTGGCCACCTTCTCTGGAAGCAGCTTTGCAGCGATGGGGGACCATCTCACCGAAAGCTCCTTGCCTAACCACTATGGATACCAATGGAAAACCACTGTATATTCTCACGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.512 C2=0.313
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=PU(6.1=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCTGCCCCTCCAGATGT
R:
GTCCCCCATCGCTGCAAAG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]