DreEX6095473 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27070389-27074264:+
Coord C1 exon
chr24:27070389-27070523
Coord A exon
chr24:27072450-27072569
Coord C2 exon
chr24:27074067-27074264
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTGTGCTCCTCAGGAG
3' ss Score
9.52
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGAATCACTCAGCCCCTCCGGATGTCACCACCTACACCTCCGAACATCCCGTTCAGGTGGAGAGGCCACAGGTGTCCACCGTACCCCGGACAACACCCAAATATGGCAACGCCGAACTCATGGAGACCGGAGACG
Seq A exon
GAGTCCCAGTTAGCAGTCGTGTTTCTGCTAAAATCCAGCAACTTGTAAACACATTAAAGCAGCCCAGACGACCTCCGCTTCGAGAGTTTTTTGTTGATGATTTTGAAGAGCTCCTAGAAG
Seq C2 exon
TCCAGCAACCTGACCCAAACCAGCCGCGGCCAGAGGGGGCTCAGATGGTCCCGATTCGAGGAGAGCCGCTGGGGGTCGTCACTAATTGGCCACCATCTCTTGAAGCTGCTCTTCAACGCTGGGGGACGATTTCACCCAAAGCCCCCTGTCTGACCACGATGGACACCAACGGCAAACCCCTCTACGTCCTTACTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.583 C2=0.313
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=PU(6.1=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACCTCCGAACATCCCGTT
R:
CTTTGGGTGAAATCGTCCCCC
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]