HsaEX6087262 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:459853-465139:-
Coord C1 exon
chr10:465005-465139
Coord A exon
chr10:461709-461828
Coord C2 exon
chr10:459853-460050
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGCTGATTCCTGTTTTTCAGGAG
3' ss Score
8.56
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAAATCATTCTGCACCTCCTGACGTAACCACGTACACCTCAGAGCACTCGATACAGGTGGAGAGACCGCAGGGTTCCACGGGGTCCCGGACAGCGCCCAAGTACGGCAACGCCGAGCTCATGGAGACCGGGGATG
Seq A exon
GAGTACCAGTAAGTAGCCGGGTGTCAGCAAAAATCCAGCAGCTTGTCAATACCCTCAAACGACCGAAACGACCACCTTTACGAGAATTCTTTGTCGATGACTTTGAAGAATTATTAGAAG
Seq C2 exon
TTCAACAACCGGATCCGAACCAACCAAAGCCGGAGGGGGCCCAGATGCTGGCCATGCGCGGAGAGCAGCTGGGCGTGGTCACGAACTGGCCGCCGTCGCTGGAGGCCGCACTGCAGAGGTGGGGCACCATCTCGCCCAAGGCGCCCTGCCTGACCACCATGGACACCAACGGGAAGCCCCTCTACATCCTCACTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'9-13,'9-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.561 C2=0.313
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=PU(6.1=43.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATACAGGTGGAGAGACCG
R:
GTTGGTGTCCATGGTGGTCAG
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)