BtaEX6065475 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54734522-54735092:-
Coord C1 exon
chr13:54735057-54735092
Coord A exon
chr13:54734883-54734949
Coord C2 exon
chr13:54734522-54734700
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGTCCTCCCTTGCAGGGA
3' ss Score
12.32
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGACTGCCGGGGCCCAAGGGGGAGCGAGGAGAGAAG
Seq A exon
GGAGAGCCACAGTCCCTGGCCACCATCTACCAGCTCGTGGGCCAGGCTTGCGAGTCCGCCATCCAGA
Seq C2 exon
CGCACGTGTTGAAGCTCCATGCCTGCACCCACGAGAGCACCCGGCCCCCCATGCCCATCTTGGAAGCCCCCAGGGCCCTTGGCACAAGCAACAAGGCCCGGCTCCCTGGAGAAGGGGGGCATGGTGGCCCCCACCCTGGGGACAGAGGTACTGGGGGAGGGGTCTTCTCCAGTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'42-43,'42-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.652 C2=0.985
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.6=100)
A:
PF0139113=Collagen=PD(6.8=17.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAGCGAGGAGAGAAG
R:
CAGTACCTCTGTCCCCAGGG
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]