BtaEX6065575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55431405-55432092:+
Coord C1 exon
chr13:55431405-55431569
Coord A exon
chr13:55431673-55431835
Coord C2 exon
chr13:55431959-55432092
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCCACTCTGTGTTCCTACAGGTG
3' ss Score
12.95
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
GTGTCCGTGCGCTGGGAGAAAAGTCGGATCCAGCTGATGACAGATGGGGTCTGGGCCCATAGCCAGGAGGAGCCAGGCCGGCAGCACCAGAGGCAGCAGGGCCCCCGGCCACACACACTCTTTGTGGGGGGCCTTCCTGCCGGCGGCCACAGCCCCAGGCTCCCG
Seq A exon
GTGGCCATCAGCAGCCCTGAGTTCAGGGGTTGTGTGAAGAGGCTGAGGCTGGATGGGCGGCTCCTGAGGGCCCCCACGCGGATGGTGGGGGTCACACCCTGCTTCTCAGGGCCCTTGGAGAAGGGCCTGTTCTTCACAGGCAGCGGGGGAACCGTCACTCTAG
Seq C2 exon
ACACCCTGGGGGCCACACTGCCCGACGTAGCCCTGGAGCTGGAGGTGCGGCCCCAGACAGCCACCGGCCTGGTCTTCCACTTGGGCCGGGGCCAGACGCCCCCGTACCTAGAGCTGCAGGTGCTGGGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'83-96,'83-95,84-96=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.018 C2=0.022
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(40.6=100)
A:
PF0221019=Laminin_G_2=PD(14.3=34.5)
C2:
PF0221019=Laminin_G_2=PU(24.0=64.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATGACAGATGGGGTCT
R:
AGCACCTGCAGCTCTAGGTAC
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]