GgaEX6023056 @ galGal3
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7813251-7813911:-
Coord C1 exon
chr20:7813759-7813911
Coord A exon
chr20:7813491-7813650
Coord C2 exon
chr20:7813251-7813384
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCAGGGCCTATCTCTGCAGGGC
3' ss Score
6.89
5' ss Seq
TAGGTAACC
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTCTTCTTCAGCAGAGACCAGAGCCGAGCCCAGCTGGTCATCGATGGGCTGCGAGCCCAGAGTGCTGCAGTGGCCACCGCAGAGCTCTTTGTAGCCCAGACCCCCTTGTATGTGGGGGGGGTCCCAGATGGAAGAGCCAAGGCTCACATGCTG
Seq A exon
GGCACGTCGGTCTCCAGCTTTGACGGCTGCCTGAGGAACCCGCAGCTGGACGGGAAGCCCCTGGGTACCCCCTCACACACCTTTGGGGTAACGCCGTGCTATGAGGGTGCTCTGGAGAGTGGAGTTTTCTTCGCAGCAGATGGCGGGTCCATCACCCTAG
Seq C2 exon
CTGATGCACTGGCAACTGAGCAGGACTTGGAGGTGACACTGGAAGTCCGTCCCCACAGTGCCTCTGGGCTCATCTTCCACATCGGGACAAGGAGGAGTCACCACAGCCTTGTGCTGTACATGGAGGAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'89-92,'89-91,90-92=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(39.7=100)
A:
PF0221019=Laminin_G_2=PD(14.3=33.3)
C2:
PF0221019=Laminin_G_2=PU(22.5=64.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAGCAGAGACCAGAGCC
R:
TCCTTGTCCCGATGTGGAAGA
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]