RnoEX6020639 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175553936-175554553:-
Coord C1 exon
chr3:175554389-175554553
Coord A exon
chr3:175554153-175554306
Coord C2 exon
chr3:175553936-175554069
Length
154 bp
Sequences
Splice sites
3' ss Seq
TATCCATCCGCTCCTCCTAGGTG
3' ss Score
8.93
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTGTCTGTCCGCTGGGGAATGCAGCAGGTCCAGCTTGTGGTGGATGGCAGCCAGACCTGGAGCCAGAAGGCGCCCCACCGCCGGGTCCACAGGGCAGAGGGTCCACAGCACTACACCCTCTTTGTAGGAGGTCTCCCTGCCGGCAGTTACAGTTCCAAGCTTCCT
Seq A exon
GTGTCTGTGGGGTTCAGCGGCTGTATGAAGAAGTTACAACTGGATAAGCGGCCACTGAGGGCCCCAACAAGGATGGTGGGGGTCACACCCTGTGTCTCAGGCCCCCTGGAAGATGGCCTGTTCTTCCCAGGCAGTGAGGGAGCCGTCACATTAG
Seq C2 exon
AGCTCCCCAAGGCCAAGATGCCCCATGTGAGCCTGGAGCTGGAGGTGCGGCCCTTGGCCGCTGCTGGCCTCATCTTTCACCTGGGCCAGGCCCATGCTACTCCCTACGTGCAGCTGCAGTTGCTAACAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'87-88,'87-87,88-88=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(41.5=100)
A:
PF0221019=Laminin_G_2=PD(12.3=30.8)
C2:
PF0221019=Laminin_G_2=PU(23.4=64.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCAGCAGGTCCAGCTT
R:
GTAGGGAGTAGCATGGGCCTG
Band lengths:
256-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]