BtaEX6067400 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2024840-2025986:-
Coord C1 exon
chr16:2025886-2025986
Coord A exon
chr16:2025133-2025287
Coord C2 exon
chr16:2024840-2024960
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTCTTCCTGCACAGCCT
3' ss Score
10.31
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGGCTCCCGGCCCCACACCGTCGCCAATGGCCACGAGCTGTTTGAGGTCTCAGAGGAGAGAGATGAGGAAGTTGCTGCATTTTGCCACATGCTGGATGT
Seq A exon
CCTCCGATCCGGCTCTGATGTCCAGGACTACGCCCTCACTGGGTATGTCTGGAGCGCTGTCACCCCGAGCCCGGAGCACCTCGGGGACGAGGTGAACCTGAAGGTGACCGTGCTGTGCGACAGCCTGCGGGAGCCGCTCACTTTTACCTGCAACT
Seq C2 exon
GCTCCTCCACTGTAGACTTGCTCATCTACCAGACCCTGTGCTACACCCGTGATGAACTGAGGGATGTCGACGTGGGTGACTTTGTGCTGAAGCCCTGTGGGCTGGAGGAGTTCCTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079413=PI3K_rbd=PU(32.0=62.3)
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACCGTCGCCAATG
R:
GGAACTCCTCCAGCCCACAG
Band lengths:
202-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]