DreEX0055540 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23436064-23443061:-
Coord C1 exon
chr11:23442961-23443061
Coord A exon
chr11:23441747-23441907
Coord C2 exon
chr11:23436064-23436184
Length
161 bp
Sequences
Splice sites
3' ss Seq
AAACTTCACTGTTTTATCAGGCT
3' ss Score
5.13
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGTCTCTGGGGTCCAGGCCAAATGGCTTTGGTTATGAGCTCTTTCAGGTGTCTGAAGAAAGAGATGAAGAAGTTGCGGCCTTCTGTCATGTACTTGATTT
Seq A exon
GCTGCGTTCGGCTTACCCTTGCAACGACTACTCTAAAAATTCAGGCTTTGTTTGGAGCCCTTGTGTGGCGCAAGATGAACTGCAGCAGGGCCTGGGTGTCAGCATAAAGGTCACCGTTTACAGTGACCACTTCAGAGAACCACTCACCTTTTCGTGCGACG
Seq C2 exon
GATCCTCAACAATCGACCTGCTGATCTATCAGACCCTCTGCTATGCTCACGATGACCTGGATATGATTGACGTGGACGATTATCTGCTCAAAATCTGCAGCCAGGCAGAGTTCCTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079413=PI3K_rbd=PU(32.0=60.0)
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTCCAGGCCAAATGG
R:
TTAAGGAACTCTGCCTGGCTG
Band lengths:
212-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]