RnoEX0065958 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49873194-49874616:+
Coord C1 exon
chr13:49873194-49873294
Coord A exon
chr13:49874063-49874217
Coord C2 exon
chr13:49874496-49874616
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTCTTCCTATACAGCCT
3' ss Score
10.48
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTGAGCTCTCGGACCCACACTGTCACCAATGGCCATGAATTGTTTGAGGTCTCAGAGGAGAGAGATGAGGAAGTTGCTGCGTTCTGCCACATGCTAGATAT
Seq A exon
CCTGCGCACGGGCTCTGATACCCAGGACTATTCCCTAACTGGGTGTGTCTGGAGCACTGTCACCCCGAGCCCAGAGCACCTTGGGGATGAGGTCAACCTGAAGGTGACTGTGTTGTGTGACAGTCTTCGGGAGCCACTCACCTTTACCTGCAACT
Seq C2 exon
GTTCCTCCACCGTGGACTTGCTCATTTACCAGACCCTCTGCTACACCCACGACGAGCTGAGGGAGGTGGATGTGGGCGACTTTGTGCTCAAGCCCTGTGGGCTGGAGGAATTCCTGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.399 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079413=PI3K_rbd=PU(32.0=62.3)
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGGACCCACACTGTCA
R:
GGAATTCCTCCAGCCCACAG
Band lengths:
210-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]