MmuEX0035130 @ mm9
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134962789-134968299:+
Coord C1 exon
chr1:134962789-134963806
Coord A exon
chr1:134967751-134967905
Coord C2 exon
chr1:134968179-134968299
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTTCTTCCTATACAGCCT
3' ss Score
10.36
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTGACACAGATGGCTCTTGCAAGAAACTATCCCCACCTCCTCTCCCTCCTCGTGTCTCTATCTGGGATGCCCCTCCCTTGCCTCCTAGAAAAGGATCACCCTCACCCTCCAAGATCTCTCAGCCTAATGACATCAACAGTTTCTCTTCGGCAGAACAGCCACCTGACAAACTGCTAGTGGCCCAGGACCCAGAAGAGGGAGAGCTGCCTGATGGCAGGGGACAGGGACACACGCTGGGGTCTGTGGACTACGATGGCATCAATGATGCAATTACCAGGCTCAACTTGAAGTCCACCTACGACTCAGAGATATCGTCTGATGCTACCAGGGGCTGGAAGGAGGGCCGAGGGCCCCTGGACTTCAACAAGGACACCTCTGGGAAACCTGTGGCCCGGAGCAAGACGATGCCCCCTCAGGTGCCCCCTCGAACCTATACTTCTCGATATGCCAACCGAAAAAATGCAACACCTGGCAATAACCGACGGATTTCTGCTGCTCCG
Seq A exon
CCTTCGAACGGGCTCTGATATCCAGGACTATTCCCTAACTGGGTGTGTCTGGAGCACTGTCACCCCAAGTCCAGAACACCTTGGGGATGAGGTCAACCTGAAGGTGACAGTGTTGTGTGACAGTCTCCGGGAGCCACTCACCTTTACCTGCAACT
Seq C2 exon
GTTCCTCCACCGTGGACCTGCTCATCCACCAGACCCTCTGCTACACTCACGATGAGCTGAGGGAAGTGGACGTGGGCGACTTTGTGCTGAAGCCCTGTGGGCTGGAGGAGTTCTTGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079413=PI3K_rbd=PU(32.0=62.3)
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTCTGATGCTACCAGGGG
R:
TTCCCTCAGCTCATCGTGAGT
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: