HsaEX6036215 @ hg38
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204464012-204465319:-
Coord C1 exon
chr1:204465219-204465319
Coord A exon
chr1:204464450-204464604
Coord C2 exon
chr1:204464012-204464132
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCCTGTACAGCCT
3' ss Score
10.16
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGGCTCCCGGCCCCACACTGTTGCCAATGGCCATGAGTTGTTTGAGGTCTCAGAAGAGAGAGATGAGGAGGTTGCTGCATTTTGCCACATGCTGGATAT
Seq A exon
CCTTCGATCTGGCTCTGACATCCAAGACTACTTCCTCACTGGCTATGTCTGGAGTGCTGTCACCCCTAGCCCAGAGCACCTCGGGGATGAGGTCAACCTGAAGGTGACTGTGTTGTGTGACAGGCTTCAAGAGGCACTCACTTTCACCTGCAACT
Seq C2 exon
GTTCCTCCACTGTAGACTTGCTTATCTACCAGACCCTGTGCTACACCCATGATGACCTGAGGAATGTGGACGTGGGTGACTTTGTGCTAAAGCCCTGCGGGCTGGAGGAGTTCCTGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-'13-13,'13-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079413=PI3K_rbd=PU(32.0=62.3)
C2:
PF0079413=PI3K_rbd=FE(38.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACACTGTTGCCAATGG
R:
GAACTCCTCCAGCCCGCAG
Band lengths:
202-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains