GgaEX0000566 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1597891-1599184:-
Coord C1 exon
chr26:1599084-1599184
Coord A exon
chr26:1598128-1598282
Coord C2 exon
chr26:1597891-1598011
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGCCTGCCCCTTGCCTGCAGGCT
3' ss Score
8.44
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAACTATGCCCCCCCAGGTCCCCCCACGGACCTACGTGTCCCGGTTCGGCAACAGGAAGAATGTGGCACCCAACAAGAACCGCAGGATCTCTGCCGACCCG
Seq A exon
GCTGCGGTCCAGCTCCAGCCCCCAGGACTATTCCCTGACTGGCTTCGTGTGGAGCGCCGTCAACCTCAGCCCCGAGCACCTGGGACATGGCATCAGCCTGAAGGTGACAGTGCTGTGTGACAGCCTGCGGGAGCCCCTCACCTTCACCTGCGACT
Seq C2 exon
GCTCCTCCACTGTGGATCTGCTCATCTACCAGACCCTGTGCTACACGCACGACGAGCTGCACACCGTTGATGTTGAGGATTTTGTGCTCAAGCTGTGTGGCTTGGAGGAATTCTTGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'0-3,'0-2,2-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0079413=PI3K_rbd=PU(34.4=62.3)
C2:
PF0079413=PI3K_rbd=FE(41.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGACCTACGTGTCCCG
R:
TGCAAGAATTCCTCCAAGCCA
Band lengths:
194-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]