BtaEX6067411 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2007026-2009682:-
Coord C1 exon
chr16:2009571-2009682
Coord A exon
chr16:2008404-2008546
Coord C2 exon
chr16:2007026-2007214
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCCCGATGTCACCCTGCAGATT
3' ss Score
8.79
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGTCCTGACCTGTGGCCGGAAGCTTCTGGGCTTATGGCCAGCAACACAGGAAAGTCCCAGTGCCCGCTGGAGTGCACCTAATTTCCATCAGCCAGATAGTGTGATCCTGCAG
Seq A exon
ATTGACTTTCCCACCTCGGCCTTTGACATCAAGTTCACCAGCCCTGCTGGAGACAAGTTCAGCCCCCGCTATGAGTTTGGCAGCCTCCGGGAGGAAGACCAACATGTGCTTAAAAACATCATGCAGAAGGAATCCCTGCACTG
Seq C2 exon
GCTCACGGATGCCGACAAAAAGCGCCTGTGGGAGAAGCGGTATTACTGCCACGCGGAGGTGAGCGCGCTGCCGCTGGTGCTTGCCAGCGCGCCCAGCTGGGAGTGGGCGTGCCTCCCCGACACCTATGCTCTGCTGGCGCAGTGGACCCCCATGAACCACCAGGACGCCCTGGGGCTCCTGCACGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(26.2=100)
A:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(11.5=43.8)
C2:
PF0061315=PI3Ka=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAACACAGGAAAGTCCCA
R:
GCGTCCTGGTGGTTCATGG
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]