DreEX0055530 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23369525-23404372:-
Coord C1 exon
chr11:23404261-23404372
Coord A exon
chr11:23381501-23381643
Coord C2 exon
chr11:23369525-23369713
Length
143 bp
Sequences
Splice sites
3' ss Seq
GACTTATTTTTGTCTTTCAGGTG
3' ss Score
12.37
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TGTTCTGACCTGTGGGAGGAAGCTGCTGGGTCTCTGGCCTTCAACTCCAGGCAGTGGAAATGCTCGCTCCAGTACACCAAACTTCAGCCAGCCTGACAGCGTCATCCTACAG
Seq A exon
GTGGACTTTCCTACCTCTTCTTTTGAAGTGCGCTTCAGCACCCCTGCTCCTGCTGAGTTCAGTCCCCAGTATGAGTTCTCCCACCTGGACCAGGTTAGCCAGAGACAGCTGCATGACGTCCTGCACAAGAAGTCCCTTTTCTG
Seq C2 exon
GTTGAGTCCAGAGGACCGGCGTCTGCTGTGGGAGAAGCGTTATTTCTGCCATGTGGAAGCCAGTCGTCTGCCGCTGGTTCTAGCCAGTGCGCCCAGCTGGGAGTGGGCATGTTTGCCTGACATCTATGCCCTGCTCCGCCAGTGGGGATGCATGAACCACCTGGACGCACTCGGCCTGCTCAATGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(26.2=100)
A:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(12.0=45.8)
C2:
PF0061315=PI3Ka=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGCCTTCAACTCCAGG
R:
GTCCAGGTGGTTCATGCATCC
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]