GgaEX6026619 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1589989-1591070:-
Coord C1 exon
chr26:1590959-1591070
Coord A exon
chr26:1590746-1590888
Coord C2 exon
chr26:1589989-1590177
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCACCCACCCTTTGTCCCAGATC
3' ss Score
7.55
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGTCCTGACCTGCGGGAGAAAGCTTTTGGGCTTGTGGCCGGCGACCCAGGACAACTCCAGAGCCAGATCGAGTGCCCCCAACTTCAACCAGCCCGACAGCGTCATCCTGCAG
Seq A exon
ATCGATTTCCCCACCTCTGCCTTCGACGTGAAGTTTGTGAGCCCGCTGGCGGCCGACGTGAGCCCCAAGTACGAATTTGGCAGCCTGGGTGAGGAGGACCAGCGCAGGCTGCGGGAGGCGATGCAGAAGAAATCGCTCTATTG
Seq C2 exon
GTTGACAGATGCAGACCGCAAACGGCTGTGGGAGAAGCGCTACTACTGCCACGCGGCACCCGGCTCGCTGCCCATGCTGCTGGCCAGTGCACCCAGCTGGGAGTGGGCCTGCCTGCCTGACATCTACGCCCTGCTGAGCCAGTGGACCTACATGAGCCACCAGGATGCCCTGGGGCTCCTTCATGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(26.2=100)
A:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(11.5=43.8)
C2:
PF0061315=PI3Ka=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCGGGAGAAAGCTTTT
R:
TCAGCAGGGCGTAGATGTCAG
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]