RnoEX0065954 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49888859-49891726:+
Coord C1 exon
chr13:49888859-49888970
Coord A exon
chr13:49890283-49890425
Coord C2 exon
chr13:49891538-49891726
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGATCCTATCCCAAGATT
3' ss Score
6.74
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGTCTTGACCTGTGGCCGAAAGCTTCTGGGCTTGTGGCCAGCAACACAGGAGAACTCCAGTGCCCGTTGGAGTGCACCAAATTTCCACCAGCCAGACAGTGTCATCCTGCAG
Seq A exon
ATTGACTTCCCCACCTCGGCCTTTGACATCAAGTTCACCAGCCCCCCTGGAGACAAGTTCAGCCCCCGCTATGAGTTTGGCAGTCTCCGGGAGGAGGACCAGCGCAAACTTAAAGACATTACGCAGAAGGAGTCCCTTTACTG
Seq C2 exon
GCTCTCTGATGCCGACAAGAAGCAACTGTGGGAGAAGCGCTATTACTGCCACACTGAGGTGAGCTCGCTCCCCTTGGTGCTCGCCAGTGCACCCAGCTGGGAGTGGGCTTGCCTGCCGGACATCTATGCTCTCCTGCAACAGTGGACTCACATGAACCACCAGGATGCCCTGGGACTCCTGCATGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.015 C2=0.005
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=FE(26.2=100)
A:
PF0079219=PI3K_C2=PD(3.5=10.4),PF0061315=PI3Ka=PU(11.5=43.8)
C2:
PF0061315=PI3Ka=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCAACACAGGAGAACTC
R:
GCATCCTGGTGGTTCATGTGA
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]