BtaEX6068483 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39919742-39927285:+
Coord C1 exon
chr16:39919742-39919943
Coord A exon
chr16:39922100-39922303
Coord C2 exon
chr16:39927173-39927285
Length
204 bp
Sequences
Splice sites
3' ss Seq
TATCCCTCTCCCCAATGTAGGAG
3' ss Score
9.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGAGTCTGCTCGCAAGGCATGGGAGAATTCTCCAAATGTAAGGGAAAAGGGGTCCCCAGTAACCTCTACAGCACCTCCAATTGCAAGCGGGGTCAGCAGTAGTGCGAGTGGACCAAGCACTGCTAATTACAGTTCGTTCTCAAGTGCATCAGTGCCGCAGATTCCTGTTGCTTCAGTCACTCCCACAACTTCACTGTCAG
Seq A exon
GAGCTGGTACATATACTACCTCTTCTTTGAGTACAAAATCTACAACCACATCAGACCCTCCTAATATCTGTAAAGTGAAACCCCAACAATTACAAACAAGCAGCCTGCCTTCTGCAAGTCATTTTTCACAGTTAAGCTGTATGCCTTCCCTTATTGCTCAGCAGCAACAGAGTCCACAAGTCTATGTGTCTCAGTCTGCAGCAG
Seq C2 exon
CTCAGATCCCAGCTTTCTACATGGACACAAGTCATCTATTCAATACCCAACATGCGCGACTGGCTCCACCATCCTTGGCTCAGCAACAAGGCTTCCAACCAGGTCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821-'43-41,'43-40,44-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=0.478 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAAGGCATGGGAGAATTC
R:
ACCTGGTTGGAAGCCTTGTTG
Band lengths:
295-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]