GgaEX0004292 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:4847336-4861092:-
Coord C1 exon
chr8:4860879-4861092
Coord A exon
chr8:4848085-4848288
Coord C2 exon
chr8:4847336-4847457
Length
204 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTTCTCTCCTTCTAGGAG
3' ss Score
12.15
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATGGAGTCCGCACGCAAAGCATGGGAGAATTCCCCAAACATGGGGGAGAAGAGTTCACCAGTGACCTCAGCAGCATCTCCCATAGCTGGTGGCAGCAGCAGCAACAGCAGCAGCAGCAACGCTGTGCCAAGCAGTGGTACTTACAGCTCCTTCTCTAGTGCATCAATGCCTCCTATTCCTGTGGCTTCAGTTACACCAACTACTTCACTATCAG
Seq A exon
GAGCTGGAACATACACGACCTCTTCACTGAGTACAAAGACTGCAAGCACCTCGGACCCTCCCAATATATGTAAAGTGAAACCACAACAATTGCAGACAAGCAGCCTAGCTTCTGCAAGCCACTTTTCCCAGCTGAGCTGCATGCCATCCCTCATTGCCCAACAACAGCAGAGTCCCCAGGTCTATGTGTCTCAGTCTGCAGCAG
Seq C2 exon
GCACTGCAGCTCAAATTCCAGCTTTTTATATGGATACAAGTCACCTGTTCAACACCCAACATGCACGTTTGGCACCACCATCTTTGGCCCAGCAGCAAGGCTTTCAACCAGGACTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290-'48-56,'48-55,49-56
Average complexity
S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.478 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACATGGGGGAGAAGAGT
R:
TCCTGGTTGAAAGCCTTGCTG
Band lengths:
294-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]