GgaEX0004292 @ galGal4
Exon Skipping
Gene
ENSGALG00000003290 | PRRC2C
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr8:4727240-4729241:-
Coord C1 exon
chr8:4729141-4729241
Coord A exon
chr8:4727968-4728171
Coord C2 exon
chr8:4727240-4727340
Length
204 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTTCTCTCCTTCTAGGAG
3' ss Score
12.15
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAGCAACGCTGTGCCAAGCAGTGGTACTTACAGCTCCTTCTCTAGTGCATCAATGCCTCCTATTCCTGTGGCTTCAGTTACACCAACTACTTCACTATCAG
Seq A exon
GAGCTGGAACATACACGACCTCTTCACTGAGTACAAAGACTGCAAGCACCTCGGACCCTCCCAATATATGTAAAGTGAAACCACAACAATTGCAGACAAGCAGCCTAGCTTCTGCAAGCCACTTTTCCCAGCTGAGCTGCATGTCATCCCTCATTGCCCAACAACAGCAGAGTCCCCAGGTCTATGTGTCTCAGTCTGCAGCAG
Seq C2 exon
GCACTGCAGCTCAAATTCCAGCTTTTTATATGGATACAAGTCACCTGTTCAACACCCAACATGCACGTTTGGCACCACCATCTTTGGCCCAGCAGCAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290-'37-35,'37-34,38-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCTGTGCCAAGCAGTG
R:
CTTGCTGCTGGGCCAAAGAT
Band lengths:
196-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]