HsaEX6034899 @ hg19
Exon Skipping
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171544066-171548605:+
Coord C1 exon
chr1:171544066-171544267
Coord A exon
chr1:171546573-171546776
Coord C2 exon
chr1:171548493-171548605
Length
204 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTTCCCCAAATATAGGAG
3' ss Score
6.35
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATGGAGTCTGCACGCAAAGCATGGGAGAATTCTCCAAATGTAAGGGAAAAGGGGTCTCCAGTAACTTCCACAGCACCTCCAATTGCAACTGGAGTCAGCAGTAGTGCCAGTGGACCAAGCACTGCTAATTACAATTCGTTCTCAAGTGCATCCATGCCCCAGATTCCTGTTGCTTCAGTCACTCCTACAGCATCACTATCAG
Seq A exon
GAGCTGGTACATACACTACCTCTTCTTTGAGCACAAAATCTACAACCACATCGGACCCTCCAAATATTTGTAAAGTGAAACCTCAGCAGTTACAGACAAGCAGCCTGCCTTCTGCAAGTCATTTTTCACAGTTAAGCTGTATGCCTTCCCTTATTGCCCAGCAGCAACAGAATCCGCAAGTTTATGTGTCTCAGTCTGCAGCAG
Seq C2 exon
CTCAAATCCCAGCCTTCTATATGGACACAAGTCATTTATTCAATACCCAACATGCACGATTGGCTCCGCCATCCTTGGCTCAACAACAGGGTTTCCAACCAGGTCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.798 A=0.494 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGCACGCAAAGCATG
R:
GGAAACCCTGTTGTTGAGCCA
Band lengths:
295-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)