MmuEX6028726 @ mm10
Exon Skipping
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162681221-162684256:-
Coord C1 exon
chr1:162684055-162684256
Coord A exon
chr1:162682318-162682521
Coord C2 exon
chr1:162681221-162681333
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTCTTCAAATACAGGAG
3' ss Score
8.91
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGGAGTCTGCACGGAAGGCATGGGAGAATTCTCCAAATCTACGAGAAAAGGGGTCCCCAGTAACTTCTACAGCACCTCCCATTGTGAGCGGAGTCAGCAGCAGTGCCAGTGGACCAAGCACTGCTAATTACAGCTCCTTTTCCAGTGCATCAATGCCGCAGATCCCAGTTGCGTCAGTCACTCCTACAGCATCACTATCAG
Seq A exon
GAGCTGGTACTTACACTACCTCTTCATTGAGTACAAAATCTACAACCACTTCGGACCCTCCGAATATTTGTAAAGTAAAACCCCAACAATTACAGACCAGCAGCCTACCTTCTGCAAGTCACTTTTCACAGTTGAGCTGTATGCCTTCCCTCATTGCACAGCAGCAGCAGAGCCCGCAGGTTTATGTGTCTCAGTCTGCAGCAG
Seq C2 exon
CTCAAATCCCAGCCTTCTATATGGATACAAGTCATTTATTCAATACGCAGCATGCGCGATTGGCTCCACCATCCCTGGCTCAGCAGCAGGGCTTCCAACCTGGTCTCTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-'47-64,'47-61,48-64=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=0.466 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGAAGGCATGGGAGAATT
R:
TGCGAGAGACCAGGTTGGAAG
Band lengths:
304-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types