DreEX6044272 @ danRer10
Exon Skipping
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15138607-15141778:-
Coord C1 exon
chr20:15141592-15141778
Coord A exon
chr20:15141290-15141493
Coord C2 exon
chr20:15138607-15138728
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCTCTATTACACAGGGT
3' ss Score
8.22
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ATGGAATCGGCAAGGAAGGCTTGGGAAAACTCACCCAGTCTGGTTGAAAAGAGCTCTCCTGTCACCTCCTCTGCTTCCCCCATCACCAGTGGAGGAGGAGCAGGCAGTGCCCCCTTCAACTCCTTCTCCAGTGCTTCAGTGCCACAGATACCTGTGGCCTCTGTCACCCCCAGCACCTCCCTGTCTG
Seq A exon
GGTCTGCAACTTACACAACATCCTCTCTAAGCACCAAGAGCACATCAGCTTCTGACCCTCCCAACATCTGTAAGGTGAAGCCGCAGCAGCTGCAGAGTTCAGGAATGTCCAGCACTAACTTTTCCCAGTTGGGCTGTGCTCCTTCTCTGCTCCCACCGCAGCAGCAACAGACCCCACAGGTGTTCGTTTCCCAGTCTGCAGCAG
Seq C2 exon
GTTCTGCAGCTCAAATCCCGGCCTTCTACATGGACACCAGCCACTTGTTTAGTGCAACTCACCCTCGCCTGGCTCCTCCCTCCATAGCACAGCAGCAAGGCTTTCAACCTGGACTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-'26-32,'26-30,27-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.841 C2=0.683
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGGAAGGCTTGGGAAAA
R:
TCCAGGTTGAAAGCCTTGCTG
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]