BtaEX6069631 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52677073-52678104:-
Coord C1 exon
chr16:52677993-52678104
Coord A exon
chr16:52677431-52677547
Coord C2 exon
chr16:52677073-52677265
Length
117 bp
Sequences
Splice sites
3' ss Seq
TACCCTGCACCTCCCCACAGGTG
3' ss Score
11.46
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAGCAAGGAGCCAGTGGCCCTGGGTGCCTGGACCAGGGTCTCCCTGGAGCGAAATGGACGCAAAGGAGCCATGCGGGTTGGTGATGGGCCTCGCGTGCTGGGGGAGTCCCCG
Seq A exon
GTGCCACACACCGTTCTCAACCTAAAGGAGCCGCTCTTTGTTGGGGGGGCCCCTGACTTCAGCAAGCTGGCCCGAGCAGCTGCTGTGTCCTCTGGCTTTGATGGAGCCATCCAGCTG
Seq C2 exon
GTCTCCCTGAATGGCCGCCAACTGCTGACCCGTGAGAACGTGGTCCGGGCCGTGGACGTCTCGTCCTTTGCAGACCACCCTTGTACCCAGGCTGAGGGTCAGCCTTGCCTCCATGGGGCTTCCTGTCTCCCCCGCGAGGCCTCCTATGAGTGCCTGTGTCCTGCAGGCTTCTCAGGGCTGCACTGTGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191-'40-48,'40-47,42-48=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(28.0=100)
A:
PF0005418=Laminin_G_1=FE(28.8=100)
C2:
PF0005418=Laminin_G_1=PD(6.1=12.3),PF0000822=EGF=WD(100=52.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGACGCAAAGGAGCCAT
R:
CACAGTGCAGCCCTGAGAAG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]