HsaEX6027637 @ hg38
Exon Skipping
Gene
ENSG00000188157 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr1:1051032-1051645:+
Coord C1 exon
chr1:1051032-1051043
Coord A exon
chr1:1051253-1051369
Coord C2 exon
chr1:1051453-1051645
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTACCTGGCGTCCCCGCAGGTT
3' ss Score
11.24
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
AAATCCCGCAAG
Seq A exon
GTTCCGCACACCGTCCTCAACCTGAAGGAGCCGCTCTACGTAGGGGGCGCTCCCGACTTCAGCAAGCTGGCCCGTGCTGCTGCCGTGTCCTCTGGCTTCGACGGTGCCATCCAGCTG
Seq C2 exon
GTCTCCCTCGGAGGCCGCCAGCTGCTGACCCCGGAGCACGTGCTGCGGCAGGTGGACGTCACGTCCTTTGCAGGTCACCCCTGCACCCGGGCCTCAGGCCACCCCTGCCTCAATGGGGCCTCCTGCGTCCCGAGGGAGGCTGCCTATGTGTGCCTGTGTCCCGGGGGATTCTCAGGACCGCACTGCGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188157-'63-67,'63-66,65-67=AN
Average complexity
A_C2
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(3.4=100)
A:
PF0005418=Laminin_G_1=FE(28.8=100)
C2:
PF0005418=Laminin_G_1=PD(6.1=12.3),PF0000822=EGF=WD(100=52.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains