RnoEX0007997 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173594246-173594923:-
Coord C1 exon
chr5:173594912-173594923
Coord A exon
chr5:173594585-173594701
Coord C2 exon
chr5:173594246-173594438
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTACCCCATGCCTCCTATAGGTT
3' ss Score
9.6
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
AAATCCCGCAAG
Seq A exon
GTTCCGCACACCATGCTCAACCTCAAGGAGCCTCTCTATATTGGGGGAGCTCCTGACTTCAGCAAGCTGGCCAGGGGGGCTGCAGTGTCCTCTGGCTTCAATGGTGTCATCCAGCTG
Seq C2 exon
GTGTCTCTAAGAGGCCATCAACTGCTGACTCAGGAGCATGTGTTGCGGGCAGTAGATGTCTCACCTTTTGCAGACCACCCTTGTACCCAGGCCTTGGGCAACCCCTGCCTTAATGGGGGCTCGTGTGTCCCGAGGGAAGCCACTTATGAATGCCTGTGTCCTGGGGGCTTCTCTGGGCTGCACTGCGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205-'55-56,'55-55,56-56
Average complexity
C1
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(2.2=100)
A:
PF0005418=Laminin_G_1=FE(27.9=100)
C2:
PF0005418=Laminin_G_1=PD(5.9=12.3),PF0000822=EGF=WD(100=52.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]