MmuEX0004309 @ mm10
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:156168733-156169557:-
Coord C1 exon
chr4:156169546-156169557
Coord A exon
chr4:156169220-156169336
Coord C2 exon
chr4:156168733-156168820
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTACCCCGTGTCTCCTGTAGGTC
3' ss Score
12.17
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
AAATCCCGCAAG
Seq A exon
GTCCCGCACACCATGCTCAACCTCAAGGAGCCCCTCTATGTGGGGGGAGCTCCTGACTTCAGCAAGCTGGCTCGGGGCGCTGCAGTGGCCTCCGGCTTTGATGGTGCCATCCAGCTG
Seq C2 exon
GGATAGTTGAGAAGTCAGTGGGGGACCTAGAAACACTGGCCTTTGATGGGCGGACCTACATCGAGTACCTCAATGCTGTGACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936_MULTIEX1-11/17=10-13
Average complexity
C3
Mappability confidence:
98%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(2.2=100)
A:
PF0005418=Laminin_G_1=FE(28.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types