GgaEX0028033 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2715188-2716122:-
Coord C1 exon
chr21:2716111-2716122
Coord A exon
chr21:2715528-2715644
Coord C2 exon
chr21:2715188-2715377
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCATCTCCCCTCCTTGCCAGGTG
3' ss Score
10.1
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAATCCCGTAAG
Seq A exon
GTGCCTCACGCCTTCCTCAACCTGAAGGAGCCATTCTACGTGGGGGGAGCCCCCGATTTCAGCAAGCTGGCTCGAGCTGCAGCCATCTCCACCAGCTTCTATGGAGCTGTGCAGAGG
Seq C2 exon
ATCTCCATCAAAGGGGTTCCCTTGCTGAAGGAGCAGCACATCCGCAGCGCCGTTGAAATCTCCACTTTCCGTGCCCACCCCTGCACCCAAAAGCCCAACCCGTGCCAGAATGGAGGCACCTGCAGCCCCCGGTTGGAGAGCTACGAGTGTGCCTGCCAGAGGGGCTTCTCTGGGGCTCACTGCGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'65-57,'65-56,66-57=AN
Average complexity
A_C2
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(2.2=100)
A:
PF0005418=Laminin_G_1=FE(27.9=100)
C2:
PF0005418=Laminin_G_1=PD(5.9=12.5),PF0000822=EGF=WD(100=51.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]