BtaEX6069994 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61706581-61715823:+
Coord C1 exon
chr16:61706581-61706673
Coord A exon
chr16:61712841-61712946
Coord C2 exon
chr16:61715732-61715823
Length
106 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTGTCTCTCAGTTT
3' ss Score
9.14
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTAGCATCTTGGACAAAATATTGGGCAGCTTTGTGTGGGACGCAGCTTTTCTACTATGCTGCCAAATCTCTAAAGGCTACAGAAAGAAAACAT
Seq A exon
TTTAAATCAACATCAAATAAGAACGTGTCTGTAGTAGGATGGATGGTGATGATGGCTGATGACCCAGAACATCCGGATCTCTTCTTGCTTACTGACTCTGAGAAAG
Seq C2 exon
GAAATTCGTACAAGTTTCAAGCAGGCAGTAGGATGAATGCAATGCTGTGGTTCAAGCATTTGAGTGCAGCCTGCCAAAGCAACAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718-'36-34,'36-33,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTTGGACAAAATATTGGGCA
R:
AGGCTGCACTCAAATGCTTGA
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]