RnoEX0073798 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74426037-74433043:-
Coord C1 exon
chr13:74432851-74433043
Coord A exon
chr13:74428170-74428275
Coord C2 exon
chr13:74426037-74426128
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTGCTTATCTCTCATCTCAGTTC
3' ss Score
7.33
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ACTCAGGTAGACTCTTCAGACAAGGGCAGAAAGCAGCCATGTTCTTCACCAAAATACCACAAAAAACAGTCTCTAGGCCAAATACTGAAATTCTTCTTTACTGAAATCTCTTTGAGTCAGGACTGCACAGTTCAAATCATTCTCAGCAACAAAGTCTTCTACATTCCTACTAGGATAGCCCACTAAGCACCAG
Seq A exon
TTCAAATCAACGTCAAATAAGAATGTGTCTGTGGTGGGCTGGATGGTGATGATGGCCGATGATCCAGAGCATCCAGACCTCTTTCTGCTGACTGACTCCGAGAAAG
Seq C2 exon
GAAATTCATACAAGTTTCAAGCTGGCAGCAGGATGAATGCAATGCTGTGGTTTAAACACTTGAGCGCGGCCTGCCAGAGTAACCGGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736-'42-35,'42-34,43-35
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAGACAAGGGCAGAAAGC
R:
GCCGCGCTCAAGTGTTTAAAC
Band lengths:
251-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]