DreEX0060682 @ danRer10
Exon Skipping
Gene
ENSDARG00000026519 | ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
Coordinates
chr20:16041243-16047692:-
Coord C1 exon
chr20:16047600-16047692
Coord A exon
chr20:16043632-16043737
Coord C2 exon
chr20:16041243-16041334
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCACTGTCATTCACTCCCAGTTC
3' ss Score
7.65
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTGGCAGCCTGGACTAAGTATTGGGTGGCTCTTTGTGGTACTCAGCTTTATTATTATACTGCCAAGTCCCTCAAGGCCACAGAGAGAAAACAT
Seq A exon
TTCAAGTCCACCGCCAGCAAAACTGTTTGTGTTTTGGGCCTAATGGCCATGATGGCAGACGATCCGGAACATCCTGACGTCTTCCTGCTGACCGACTCTGAGCACG
Seq C2 exon
GAAACTCGTACAAGTTCCAGGCGGGGAACAGAATGAACGCTCTGCTGTGGTTCAAACACCTGAGTGCAGCTTGTCAAAGCAACAGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026519_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTGGACTAAGTATTGGG
R:
GCTGCCTGTTGCTTTGACAAG
Band lengths:
180-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]