GgaEX6043814 @ galGal4
Exon Skipping
Gene
ENSGALG00000004273 | RALGPS2
Description
Ras-specific guanine nucleotide-releasing factor RalGPS1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJK0]
Coordinates
chr8:6285476-6293658:-
Coord C1 exon
chr8:6293566-6293658
Coord A exon
chr8:6286688-6286793
Coord C2 exon
chr8:6285476-6285567
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGCTTGTATTTTCAGTTC
3' ss Score
9.19
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTAGCATCTTGGACAAAATACTGGGTAGCATTGTGTGGAACCCAACTCTTTTACTATGCTGCAAAATCTCTGAAGGCCACAGAGAGAAAACAT
Seq A exon
TTCAAATCCACCCCGAGCAAGAATGTGTCAGTCGTGGGCTGGATGGTGATGATGGCAGACGACCCTGAACATCCAGATCTCTTCTTATTGACAGATTCGGAGAAAG
Seq C2 exon
GAAATTCATACAAATTTCAAGCTGGAAATAGAATGAATGCGATGCTCTGGTTTAAACACCTGAGTGCTGCCTGCCAAAGCAACAGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'46-48,'46-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTTGGACAAAATACTGGGT
R:
CTGTTGTCTGTTGCTTTGGC
Band lengths:
183-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]