GgaEX6043814 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6609509-6617691:-
Coord C1 exon
chr8:6617599-6617691
Coord A exon
chr8:6610721-6610826
Coord C2 exon
chr8:6609509-6609600
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGCTTGTATTTTCAGTTC
3' ss Score
9.19
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTAGCATCTTGGACAAAATACTGGGTAGCATTGTGTGGAACCCAACTCTTTTACTATGCTGCAAAATCTCTGAAGGCCACAGAGAGAAAACAT
Seq A exon
TTCAAATCCACCCCGAGCAAGAATGTGTCAGTCGTGGGCTGGATGGTGATGATGGCAGACGACCCTGAACATCCAGATCTCTTCTTATTGACAGATTCGGAGAAAG
Seq C2 exon
GAAATTCATACAAATTTCAAGCTGGAAATAGAATGAATGCGATGCTCTGGTTTAAACACCTGAGTGCTGCCTGCCAAAGCAACAGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'27-32,'27-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTTGGACAAAATACTGGGT
R:
CTGTTGTCTGTTGCTTTGGC
Band lengths:
183-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]