HsaEX0052101 @ hg19
Exon Skipping
Gene
ENSG00000116191 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:30279]
Coordinates
chr1:178866799-178876002:+
Coord C1 exon
chr1:178866799-178866891
Coord A exon
chr1:178871241-178871346
Coord C2 exon
chr1:178875911-178876002
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTTTTTTCTCTCAGTTC
3' ss Score
9.47
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTAGCATCTTGGACAAAATATTGGGCAGCTTTGTGTGGGACACAGCTTTTTTACTATGCTGCCAAATCTCTAAAGGCTACCGAAAGAAAACAT
Seq A exon
TTCAAATCAACATCCAATAAGAACGTATCTGTGATAGGATGGATGGTGATGATGGCTGATGACCCTGAACATCCTGATCTCTTCCTGCTGACTGACTCTGAGAAAG
Seq C2 exon
GAAATTCGTACAAGTTTCAAGCTGGCAATAGAATGAATGCAATGTTATGGTTTAAGCATTTGAGTGCAGCCTGCCAAAGTAACAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116191-'26-28,'26-27,27-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154131=PH_11=FE(44.3=100)
A:
PF154131=PH_11=PD(30.0=58.3)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTTGGACAAAATATTGGGC
R:
GTTTGTTACTTTGGCAGGCTGC
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)