BtaEX6070088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62688976-62695204:+
Coord C1 exon
chr16:62688976-62689190
Coord A exon
chr16:62689634-62689797
Coord C2 exon
chr16:62695091-62695204
Length
164 bp
Sequences
Splice sites
3' ss Seq
GACAATTATATGTCTTCCAGGTT
3' ss Score
8.11
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TGTCTCATCAGATAAGGGAAGATCTCAGAAAACTCCAACTTCTCCCATATCTCCAAGTTCTCAGAAACTGTTGCAGTTTGACCTTCCAGGAACTTCATTAGAAAGATCTAAATCCTCAATAGTAGTGACTCCAACAGGGTTTAAGCCTAATGCAACTTTTGCTGACATGAACCTGGCTGCCAGCAGAACGACAACAGAGATGGCGTCAACACCAG
Seq A exon
GTTCTAAGCGCTTTTCTCCTGCTGGCCTCCAGCATCGGATGGCAGCAGAACTCAGTTACTTGAGTGCCATTGAGGAGTCCGTGCGTCAACTATCAGATGTAGAAAGAGTTAGAGGAGTTTCACTTGCTCAACAGGAGAGCGTGTCTCTGGCTCAGATCATAAAG
Seq C2 exon
AAGGCACAGCAACAACGCCATGAAAGAGACTTGGCCCTTTTGAAGTTGAAGGCTGAACAAGAGGCTCTGGAATGTCAGCGACAATTAGAAGAAACCCGAAGCAAAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-'18-24,'18-23,19-24=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=0.236 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTTGACCTTCCAGGAAC
R:
TGCTTTGCTTCGGGTTTCTTCT
Band lengths:
252-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]