HsaEX0014802 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:180002997-180010383:+
Coord C1 exon
chr1:180002997-180003217
Coord A exon
chr1:180006061-180006224
Coord C2 exon
chr1:180010273-180010383
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACCATTGTCATGCCTTCCAGGTT
3' ss Score
9.61
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TGTCTCATCAGATAAGGGAAGATCTCAGAAAACTCCAACTTCTCCCCTGTCACCAAGTTCCCAGAAATCATTGCAGTTTGACGTTGCAGGAACTTCTTCAGAAAGATCTAAGTCGTCAGTAATGCCTCCAACTATAACAGGATTTAAGCCTAATGCACCTCTCACTGATCTGAACCCGGCAGCCAGCAGAACAACGACAGAGAACATGGCTCCAATACCAG
Seq A exon
GTTCTAAGCGCTTTTCTCCTGCTGGCCTCCATCATCGTATGGCAGCAGAACTCAGTTATCTGAACGCCATTGAGGAGTCGGTGCGCCAACTGTCAGATGTAGAAAGAGTTAGAGGCATTTCACTTGCTCAGCAGGAGAGTGTGTCTCTAGCTCAGATAATAAAG
Seq C2 exon
GCACAACAGCAACGCCATGAAAGAGACTTGGCCCTCTTGAAACTAAAGGCTGAACAAGAGGCTCTGGAGAGTCAGAGACAATTAGAAGAAACCCGAAACAAAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.249 C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCCCCTGTCACCAAGT
R:
CTCCAGAGCCTCTTGTTCAGC
Band lengths:
253-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)