GgaEX1014801 @ galGal3
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6334426-6335215:-
Coord C1 exon
chr8:6334995-6335215
Coord A exon
chr8:6334718-6334881
Coord C2 exon
chr8:6334426-6334536
Length
164 bp
Sequences
Splice sites
3' ss Seq
AGTTAAATCCTGTCCTTCAGGAT
3' ss Score
6.97
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTTCTCAGACAAGGGAAGATCTCAGAAGACGCCGACTTCTTCCCCATCTCCAGGTTCCCAAAAAATTATGCAGTTTGATTCTGTAGTCAATACAGCAGAGAGAGCGAAGTCACCTTCTGGCTTTTCTGGAAGCGCAGCATCAGGGCAGAAGCCCAACCTAGCTTTCTCTGACTTGAGTCTGGGAACTAGTAGGCCTGCAGCAGGAGTAGCCTCAGCGAGTG
Seq A exon
GATGTATGCGCTTCTCCCCTGCTGGTCTTCAGCATCGTTTGTCAGCAGAATTGAACTACCTTACTGCCATTGAAGAGTCTGTACGACAGCTTTCAGATGTGGAACGAGTACGAGGCATATCACTGGCCCAGCAGGAGAGCGTTTCTTTGGCTCAGATTCTAAAG
Seq C2 exon
GCCCAACAGCAGCGTCATGAACGGGACATAGCTCTTTTGAAAATCAAGGCTGAAAACGAAGCTTTAAAAAATCAAAGACAACTGGAAGAGACAAGGCAGAAGGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=0.055 C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCCATCTCCAGGTTCC
R:
AAGCTTCGTTTTCAGCCTTGA
Band lengths:
248-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]