MmuEX6028422 @ mm10
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155911888-155915651:-
Coord C1 exon
chr1:155915449-155915651
Coord A exon
chr1:155914716-155914879
Coord C2 exon
chr1:155911888-155911998
Length
164 bp
Sequences
Splice sites
3' ss Seq
AACGATGCATCTGTGCCCAGGTC
3' ss Score
6.8
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
TGGCTCTTCAGACAAGGGAAGATCTCAGAAGACTCCAACTTCTCCCCTATCTCCAAGTTCACAGAAATTGTTACAGTTTGACCTTCCTGGGACTTCCTTAGAAAGATCTAAGTCCTCAGTCATAGTACCTCCAACTACAACTGGATTTAAGCCCACTGCAGCTTTTACTGACGTGAATAAAACAGAGATGGCTTCAGCACCAG
Seq A exon
GTCCTCAGCGTTTCTCTCCTGCTGGCCTTCAGCATCGCATGGCTGCAGAACTCAGTTACCTGAGTGCTCTCGAGGAGTCAGTGCGCCAGCTGTCCGACGTGGAGAGAGTTAGGGGCATTGCCCTCGCTCAGCAGGAGAGTGTATCTCTGGCTCAGATCATAAAG
Seq C2 exon
GCACAGCAGCAACGTCATGAAAGAGATTTGGCCTTATTGAAGCTAAAAGCTGAACAGGAGGCTTTGGAGTGTCAGAGACAGTTAGAAGAAACCCGGAACAAAACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'27-27,'27-26,28-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=0.236 C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTGACCTTCCTGGGAC
R:
CTGAGCTGTTTTGTTCCGGGT
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types