GgaEX1014801 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6014602-6015391:-
Coord C1 exon
chr8:6015171-6015391
Coord A exon
chr8:6014894-6015057
Coord C2 exon
chr8:6014602-6014712
Length
164 bp
Sequences
Splice sites
3' ss Seq
AGTTAAATCCTGTCCTTCAGGAT
3' ss Score
6.97
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTTCTCAGACAAGGGAAGATCTCAGAAGACGCCGACTTCTTCCCCATCTCCAGGTTCCCAAAAAATTATGCAGTTTGATTCTGTAGTCAATACAGCAGAGAGAGCGAAGTCACCTTCTGGCTTTTCTGGAAGCGCAGCATCAGGGCAGAAGCCCAACCTAGCTTTCTCTGACTTGAGTCTGGGAACTAGTAGGCCTGCAGCAGGAGTAGCCTCAGCGAGTG
Seq A exon
GATGTATGCGCTTCTCCCCTGCTGGTCTTCAGCATCGTTTGTCAGCAGAATTGAACTACCTTACTGCCATTGAAGAGTCTGTACGACAGCTTTCAGATGTGGAACGAGTACGAGGCATATCACTGGCCCAGCAGGAGAGCGTTTCTTTGGCTCAGATTCTAAAG
Seq C2 exon
GCCCAACAGCAGCGTCATGAACGGGACATAGCTCTTTTGAAAATCAAGGCTGAAAACGAAGCTTTAAAAAATCAAAGACAACTGGAAGAGACAAGGCAGAAGGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'15-19,'15-18,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=0.055 C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCCATCTCCAGGTTCC
R:
AAGCTTCGTTTTCAGCCTTGA
Band lengths:
248-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]