DreEX6048811 @ danRer10
Exon Skipping
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14544526-14545227:-
Coord C1 exon
chr8:14544974-14545227
Coord A exon
chr8:14544732-14544892
Coord C2 exon
chr8:14544526-14544636
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTCCGCTTCAGCAGAGC
3' ss Score
5.57
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
TCTTTTTGGCTCTGAGGGAAAGAAGTCTCCCCGAAGCGCTCTGGCGACTCCTGCTGCTGCTTCTCCAGCCAGCTCTGGTTCTTCTCGGTTGTCTCCAGGTGACTGTATCCCATCTAAAGGGTCTGTCCAAGGGTCAGGTTCCCCTCACGCAGCTCTACCCAGTTCCTCCTCATCTTCCTCTTCAGCAGTCCGGGCTAAATCCAACCCCTCGCCACATACTCAAAGCCCAGGAAGAACAGAGCACAGAACTACAG
Seq A exon
AGCTCAAGTTTGCTCCTGGGGTCTTGCATCAGCGCCTGTCTGCTGAGCTCAACTACCTGGATGCAGTGGAGGAGTCGGTACGACAGCTCGGTGATGTGGAGAGAGTGAGAGGAGTGTCTCTCGCTCAGCAAGAAACCGTCTCACTTGCACAGATTCTGAAG
Seq C2 exon
TCCCAACAGCAGAGGCATGAGCGTGACCTGTACCTGCTGAGGATGAAGGCAGAGCAGGAAGCCCTTGAAACACAGATGCAGCTGGAAGAAAGCAGACAGAAGGCTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.382 C2=0.703
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGTCTGTCCAAGGGTCA
R:
GCAGCCTTCTGTCTGCTTTCT
Band lengths:
246-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]