BtaEX6070094 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62661045-62667340:+
Coord C1 exon
chr16:62661045-62661158
Coord A exon
chr16:62665318-62665464
Coord C2 exon
chr16:62666682-62667340
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATATATCTTTTCTTTTTTAGGTA
3' ss Score
11.99
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATGATAGCTCTATGAAAGAAAAACCAGCTGAAAAAAGTAGAGAGAAGAAAGTGGTCAAGCCAGTACGAAAAGTCCAAAAGGTAGCACAGTTATCAAGTTCAGAATGTAAAACAG
Seq A exon
GTAGCAGTCATCTGATTAGTACATCGTCTTGGCGAGATGGACAAAAATTAGTAAAGAAAATTCTTGGTCCTGCACCTAGAATAGAGCAAAAAGAGCGAAGAGCAGCATCAAGTGACAGAAGTGGAAGAGAAAGAACTACTAAATCTG
Seq C2 exon
GGGGCCATATTGGAAGAGCAGAGTCGGATCCTAGATTGGATGTTTCACATAGACATCGTCCACAAAACTCAGAACGTTCAAGAAGTAGAGCTCGGTCAGAAAATAATGTAAAGAAATTAGTTCCATCTCTTCCAGATAATAAACAGGAGGAAAATGCTGCCTTAAATAAGGACTTTTTACCTGTTGAAATTCGTGGAATTCTTGATGACCTCCAGTTGGATTCAGCAGCTCAGACTGCAAGACAAGAGACAGGAGAGTTACAGAATCAGAAGTCATCAGCATCCATACAAGCTCCTAGAAGTCATAGCCCAATAAAAAGAAAACCTGACAAAATAACAGCTAATGAAGATCCCCCTGTTATTTCTAAAAAGCGTCACTATGATACAGATGAGGTACGACAGTACATTGTTAGACAGCAGGAAGAAAGGAAGAGGAAACAGAATGAGGAGAAGAAGGCCCAAAAGGAGGCCACTGAGCAGAAGAACAAACGATTACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-'9-12,'9-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.920 C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGAGAGAAGAAAGTGGTCAAGC
R:
AAGGCAGCATTTTCCTCCTGT
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]