MmuEX0010974 @ mm9
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157779919-157787960:-
Coord C1 exon
chr1:157787847-157787960
Coord A exon
chr1:157782945-157783091
Coord C2 exon
chr1:157779919-157780580
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGTGCAATATATATTTTAGGTA
3' ss Score
6.13
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
ATGATACCTCTGTAAAAGAGAAGCCTGTTGAAAAAAGTAAAGAGAAGAAAGTGGTTAAACCAGTACGAAAAATCCAAAAAGTGACACAGTTATCAAATCCAGAATGCAAAACAG
Seq A exon
GTAGCAGTCGTTTGATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCACCCAAGATGGAGCAAAAAGAGCGAAGACCCACATCGAATGACAGAAGTGGAAGAGAAAGAGTGGCTAAATTTG
Seq C2 exon
GGGGCCATATTGGAAGAGCAGAATCGGACCCCAAATTGGATGTTTCACATAAACAGCTTCCACGAAGCTCAGCACGTTCAAGAAGTAGTAGAGCTTGGTCTGAAACTAATATAGTGAAATCAGCTCTGTCCCTTCCAGACAATAAGCAGGAGGAAAGCGCTGCCTTAAACAAGGATTTTTTGCCAGTTGAAATTCGTGGGATTCTTGATGACTTACAGCTAGATTCTTCAGCTCAAGCTGTGAGGCAAGAGGCTGGAGAGGGACAGAATCAGAAGTCATCGGCCCCTGAACAAGTACCTCGGAGTCACAGCCCCGTGAAAAGAAAGCCAGACAAAATAACAGCGAACGAGGATCCGCCTGTGATTTCCAAGAAGCGCCACTATGACACAGATGAGGTACGACAGTACATTGTTAGACAGCAGGAGGAGAGGAGGAGGAGGCAACACGAAGAGAAGAAGGCTCAGAAGGAGGCTACGGAGCAGAAGAACAAACGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'11-11,'11-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=0.832 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTAAAAGAGAAGCCTGTTGA
R:
GTCTGGAAGGGACAGAGCTGA
Band lengths:
246-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: