RnoEX0020097 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73578751-73585030:-
Coord C1 exon
chr13:73584917-73585030
Coord A exon
chr13:73582291-73582434
Coord C2 exon
chr13:73578751-73579409
Length
144 bp
Sequences
Splice sites
3' ss Seq
GAGTGCAATATGTATTTTAGGTG
3' ss Score
6.02
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ATGATACCTCTGTAAAAGAGAAGCCTGTTGAAAAAAGTAAAGAGAAAAAAGTGGTCAAACCAGTACGAAAAATCCAAAAAGTGACACAGTTGTCAAATCCAGAATGCAAAACAG
Seq A exon
GTGGTAGTCGTTTGATAAGTACGTCGTCTTGGCGAGATGGACAGAAGTTAGTAAAGAGGATTCTGGGACCTGCACCTACGATGGAGCAGAGGGCGCGAAGGCCCGCGTCGAGCGACGGAAGAGGGAGAGGAAGAGGGGCGACCG
Seq C2 exon
GGGGCCATATTGGAAGAGCAGAATCGGACCCCAAGTTGGATGTTTCACATAAGCAGCTTCCACGAAGCTCAGAACGCTCAAGAAGTAGAGCTTGGTCTGAAAATAATGTAGTGAAGTCAGCTCTGTCCCTCCCAGACAATAAGCAGGAGGAAAATGCTGCCTTAAACAAGGACTTTTTGCCAGTTGAAATTCGTGGGATCCTTGATGACTTACAGCTAGATTCTTCAGCTCAAACCGTGAGGCAGGAGGTTGGAGAGGTACAGAATCAGAAGTCAGTGGCCTCTGTACAAGCGCCTAGGAGTCACAGCCCTGTGAAAAGAAAGCCTGACAAAATAACGGCGAATGAGGATCCACCTGTGATTTCCAAGAAGCGCCACTACGACACAGATGAGGTGCGACAGTACATTGTTAGACAGCAGGAGGAGAGGAGGAGGAGGCAACATGAAGAGAAGAAGGCTCAGAAGGAGGCTACGGAGCAGAAGAACAAACGATTACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-'12-18,'12-16,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=0.878 C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTAAAAGAGAAGCCTGTTGA
R:
ATTGTCTGGGAGGGACAGAGC
Band lengths:
246-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]